CP-2002Add to well known brain atlas frames of reference
Status
Assigned
Date of Last Update
2020/01/29
Person Assigned
David Clunie
Submitter Name
David Clunie
Submission Date
2020/01/04
Correction Number CP-2002
Log Summary: Add to well known brain atlas frames of reference
Name of StandardPS3.6
Rationale for Correction:Supplement 73 Spatial Registration Storage SOP Classes introduced various well-known frames of reference for the brain defined by UIDs.Since then, more atlases have been defined and are used for brain segmentation and analysis. These are used for such things as AI/ML based segmentation challenges.Add corresponding well-known frame of reference UIDs.Also, update ICBM atlas links, since LONI has moved from UCLA to USC.[Open Issue: Do we need to add the MNI152 atlas (aka. ICBM152 - so what should we call it?) and what is the best reference and what are the linear and non-linear and asymmetric and symmetric variants, and what about the already "linearly transformed to Talairach space" comment? See http://nist.mni.mcgill.ca/?page_id=714. What about the MNI-ICBM2009c version vs. 2009a etc.?][Open Issue: Do we need to add MNI305? See http://nist.mni.mcgill.ca/?p=957. What about the differenttly sampled variants discussed in http://onlinelibrary.wiley.com/doi/full/10.1002/hbm.20345 ? Do we need a generic/nominal "MNI coordinates" (a la Talairach atlas 1.2.840.10008.1.4.1.1) FoR when no specific template is referenced?]][Open Issue: Do we need to add the MNI Pediatric atlases?][Open Issue: Do we need to distinguish existing ICBM452 from ICBM452/warp5, and ICBM452/air12 variants, and if so should we retire the existing UID as ambiguous? See http://bmap.ucla.edu/portfolio/atlases/ICBM_452_T1_Atlas/.][Open Issue: Do we need to add more ICBM templates, e.g. ICBM DTI-81?][Open Issue: Do we need to add any animal atlases?]
Correction Wording:
Amend PS3.6 as follows (changes to existing text
are bold and underlined for additions and struckthrough for
removals):
Registry of DICOM Unique Identifiers (UIDs) (Normative)
UID Values
UID Value
UID Name
UID Type
Part
1.2.840.10008.1.4.1.1
Talairach Brain Atlas Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.2
SPM2 T1 Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.3
SPM2 T2 Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.4
SPM2 PD Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.5
SPM2 EPI Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.6
SPM2 FIL T1 Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.7
SPM2 PET Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.8
SPM2 TRANSM Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.9
SPM2 SPECT Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.10
SPM2 GRAY Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.11
SPM2 WHITE Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.12
SPM2 CSF Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.13
SPM2 BRAINMASK Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.14
SPM2 AVG305T1 Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.15
SPM2 AVG152T1 Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.16
SPM2 AVG152T2 Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.17
SPM2 AVG152PD Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.1.18
SPM2 SINGLESUBJT1 Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.2.1
ICBM 452 T1 Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.2.2
ICBM Single Subject MRI Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.2.X1
SRI24 Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.2.Y1
Colin27 Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.2.Z1
LPBA40/AIR Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.2.Z2
LPBA40/FLIRT Frame of Reference
Well-known frame of reference
1.2.840.10008.1.4.2.Z3
LPBA40/SPM5 Frame of Reference
Well-known frame of reference
Well-known Frames of Reference
UID Value
UID Name
Normative Reference
1.2.840.10008.1.4.1.1
Talairach Brain Atlas Frame of Reference
Talairach J. and Tournoux P. Co-Planar stereotactic atlas of the human brain. Stutgart: Georg Thieme Verlag, 1988.
SPM2 (Statistical Parametric Mapping) templates are available at , and they are described at .ICBM templates are available at
http://www.loni.ucla.edu/ICBM/ICBM_ICBMAtlases.htmlhttp://resource.loni.usc.edu/resources/atlases-downloads/
and
http://bmap.ucla.edu/portfolio/atlases
.