L Correspondence of Anatomic Region Codes and Body Part Examined Defined Terms (Current)
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L Correspondence of Anatomic Region Codes and Body Part Examined Defined Terms

This Annex defines a correspondence between the codes used in Context Groups for Anatomic Region Sequence (0008,2218) and Body Part Examined (0018,0015), as well as providing a list of the Defined Terms for Body Part Examined (0018,0015), for human use in Table L-1 and for large animal use in Table L-2 and for small animal use in Table L-3. In addition, Table L-5 summarizes whether or not selected anatomic concepts need a laterality modifier (as opposed to being unpaired, or already incorporating laterality as a precoordinated concept).

Note

The tables in this Annex contain the union of a large variety of codes suitable for different applications and modalities, including cross-sectional, projectional and visible light. as such, only a subset will be appropriate for any specific application.

The tables are not complete. For example, some entries for Body Part Examined (0018,0015) (e.g., FETALARM, FETALDIGIT, FETALHEART, FETALLEG, FETALPOLE) do not have equivalent Coded Concepts in SNOMED CT. They remain in these tables since they have been defined in the Standard in the past. Many SNOMED CT anatomical structure concepts used elsewhere in the Standard, such as in Context Groups, do not have entries for Body Part Examined (0018,0015), since they are expected to be used in place of, rather than in addition to, the string-valued Attribute.
Values for Body Part Examined are limited by the CS VR length restriction to 16 characters in length and hence are somewhat contrived. Some inconsistency in abbreviations may be apparent but this largely reflects historical usage or clinically well recognized usage. No spaces or underscores are used, and singular rather than plural forms are used.
To determine if the Body Part Examined (0018,0015) or Anatomic Region Sequence (0008,2218) or Primary Anatomic Structure Sequence (0008,2228) is a paired structure, the following approach may be used:
1. If the anatomic site is specified by a string in the value of (0018,0015) Body Part Examined, find it in one of the tables:
  - Table L-1 Corresponding Codes and Terms for Human Use
  - Table L-2 Corresponding Codes and Terms for Large Animals
  and extract the SNOMED CT Code from the column "Code Value".
2. Search for the SNOMED CT Code in Table L-5 Pairedness of Anatomic Concepts
3. Use the value from column "Paired Structure":
  - N = It is not a paired structure; the laterality-related Attributes will not be required.
  - Y = It is a paired structure; at least one of the laterality-related Attributes will be required, depending on the IOD.
The laterality-related Attributes are:
- Laterality (0020,0060)
- Image Laterality (0020,0062)
- Frame Laterality (0020,9072)
- Measurement Laterality (0024,0113)

Table L-1. Corresponding Codes and Terms for Human Use

Coding Scheme Designator	Code Value	Code Meaning	Body Part Examined	SNOMED-RT ID (Retired)	FMA Code Value	UMLS Concept Unique ID
SCT	818981001	Abdomen	ABDOMEN			C5231290
SCT	818982008	Abdomen and Pelvis	ABDOMENPELVIS			C5231291
SCT	7832008	Abdominal aorta	ABDOMINALAORTA	T-42500		C0003484
SCT	85856004	Acromioclavicular joint	ACJOINT	T-15420		C0001208
SCT	23451007	Adrenal gland	ADRENAL	T-B3000		C0001625
SCT	77012006	Amniotic fluid	AMNIOTICFLUID	T-F1320
SCT	70258002	Ankle joint	ANKLE	T-15750		C0003087
SCT	128585006	Anomalous pulmonary vein		T-48503		C0265914
SCT	128553008	Antecubital vein	ANTECUBITALV	T-49215		C1276271
SCT	194996006	Anterior cardiac vein	ANTCARDIACV	T-48403		C0226662
SCT	60176003	Anterior cerebral artery	ACA	T-45540	50028	C0149561
SCT	8012006	Anterior communicating artery	ANTCOMMA	T-45530		C0149562
SCT	17388009	Anterior spinal artery	ANTSPINALA	T-45730		C0149603
SCT	68053000	Anterior tibial artery	ANTTIBIALA	T-47700		C0085816
SCT	53505006	Anus	ANUS	T-59900		C0003461
SCT	110612005	Anus, rectum and sigmoid colon	ANUSRECTUMSIGMD	T-59490		C1267595
SCT	15825003	Aorta	AORTA	T-42000		C0003483
SCT	57034009	Aortic arch	AORTICARCH	T-42300		C0003489
SCT	128551005	Aortic fistula		D3-81922		C1290392
SCT	128564006	Apex of left ventricle		T-32602		C0580781
SCT	86598002	Apex of Lung		T-280A0		C0225703
SCT	128565007	Apex of right ventricle		T-32502		C0445242
SCT	66754008	Appendix	APPENDIX	T-59200		C0003617
SCT	51114001	Artery	ARTERY	T-41000		C0003842
SCT	54247002	Ascending aorta	ASCAORTA	T-42100		C0003956
SCT	9040008	Ascending colon	ASCENDINGCOLON	T-59420		C0227375
SCT	59652004	Atrium		T-32100		C0018792
SCT	91470000	Axilla	AXILLA	T-D8104		C0004454
SCT	67937003	Axillary Artery	AXILLARYA	T-47100		C0004455
SCT	68705008	Axillary vein	AXILLARYV	T-49110		C0004456
SCT	72107004	Azygos vein	AZYGOSVEIN	T-48340		C0004526
SCT	77568009	Back	BACK	T-D2100		C0004600
SCT	128981007	Baffle		A-00203		C1289790
SCT	59011009	Basilar artery	BASILARA	T-45800		C0004811
SCT	28273000	Bile duct	BILEDUCT	T-60610		C0005400
SCT	34707002	Biliary tract	BILIARYTRACT	T-60600		C0005423
SCT	89837001	Bladder	BLADDER	T-74000		C0005682
SCT	110837003	Bladder and urethra	BLADDERURETHRA	T-DD123		C1268386
SCT	91830000	Body conduit		T-D00AB		C1735317
SCT	72001000	Bone of lower limb		T-12700		C0448188
SCT	371195002	Bone of upper limb		T-D0821		C0003793
SCT	128548003	Boyd's perforating vein		T-49424		C1267522
SCT	17137000	Brachial artery	BRACHIALA	T-47160		C0006087
SCT	20115005	Brachial vein	BRACHIALV	T-49350		C0226812
SCT	12738006	Brain	BRAIN	T-A0100		C0006104
SCT	76752008	Breast	BREAST	T-04000		C0006141
SCT	34411009	Broad ligament		T-D6500		C0006205
SCT	955009	Bronchus	BRONCHUS	T-26000		C0006255
SCT	60819002	Buccal region of face		T-D1206		C0007966
SCT	46862004	Buttock	BUTTOCK	T-D2600		C0006497
SCT	80144004	Calcaneus	CALCANEUS	T-12770		C0006655
SCT	53840002	Calf of leg	CALF	T-D9440		C0230445
SCT	2334006	Calyx		T-72100		C0022651
SCT	113257007	Cardiovascular system	CARDIOVASCSYS	T-30000		C0007226
SCT	69105007	Carotid Artery	CAROTID	T-45010		C0007272
SCT	21479005	Carotid bulb	BULB	T-45170	50094	C0007281
SCT	57850000	Celiac artery	CELIACA	T-46400	50737	C0007569
SCT	20699002	Cephalic vein	CEPHALICV	T-49240		C0226802
SCT	113305005	Cerebellum	CEREBELLUM	T-A6000		C0007765
SCT	88556005	Cerebral artery	CEREBRALA	T-45510		C0007770
SCT	372073000	Cerebral hemisphere	CEREBHEMISPHERE	T-A010F		C0228174
SCT	122494005	Cervical spine	CSPINE	T-11501		C0728985
SCT	1217257000	Cervico-thoracic spine	CTSPINE			C5687879
SCT	71252005	Cervix	CERVIX	T-83200		C0007874
SCT	60819002	Cheek	CHEEK	T-D1206		C0007966
SCT	816094009	Chest	CHEST			C5230958
SCT	416775004	Chest, Abdomen and Pelvis	CHESTABDPELVIS	R-FAB56		C1562547
SCT	416550000	Chest and Abdomen	CHESTABDOMEN	R-FAB55		C1442171
SCT	80621003	Choroid plexus	CHOROIDPLEXUS	T-A1900	61934	C0008524
SCT	11279006	Circle of Willis	CIRCLEOFWILLIS	T-45520		C0008812
SCT	51299004	Clavicle	CLAVICLE	T-12310		C0008913
SCT	64688005	Coccyx	COCCYX	T-11BF0		C0009194
SCT	71854001	Colon	COLON	T-59300		C0009368
SCT	253276007	Common atrium		D4-31005		C0392482
SCT	79741001	Common bile duct	COMMONBILEDUCT	T-64500		C0009437
SCT	32062004	Common carotid artery	CCA	T-45100		C0162859
SCT	181347005	Common femoral artery	CFA	T-47402	323778	C0447105
SCT	397363009	Common femoral vein	CFV	G-035B	323829	C1275667
SCT	73634005	Common iliac artery	COMILIACA	T-46710		C1261084
SCT	46027005	Common iliac vein	COMILIACV	T-48920		C0226758
SCT	45503006	Common ventricle		D4-31120		C0152424
SCT	128555001	Congenital coronary artery fistula to left atrium		D4-32504		C1290487
SCT	128556000	Congenital coronary artery fistula to left ventricle		D4-32506		C1290488
SCT	128557009	Congenital coronary artery fistula to right atrium		D4-32509		C1290489
SCT	128558004	Congenital coronary artery fistula to right ventricle		D4-32510		C1290490
SCT	28726007	Cornea	CORNEA	T-AA200		C0010031
SCT	41801008	Coronary artery	CORONARYARTERY	T-43000		C0205042
SCT	90219004	Coronary sinus	CORONARYSINUS	T-48410		C0456944
SCT	128320002	Cranial venous system		T-A0191		C0447118
SCT	281130003	Descending aorta	DESCAORTA	T-D0765		C0011666
SCT	32622004	Descending colon	DESCENDINGCOLON	T-59460		C0227389
SCT	128554002	Dodd's perforating vein		T-49429		C1267525
SCT	38848004	Duodenum	DUODENUM	T-58200		C0013303
SCT	117590005	Ear	EAR	T-AB001		C0013443
SCT	16953009	Elbow joint	ELBOW	T-15430		C0013770
SCT	51114001	Endo-arterial	ENDOARTERIAL	T-41000		C0003842
SCT	80891009	Endo-cardiac	ENDOCARDIAC	T-32000		C0018787
SCT	32849002	Endo-esophageal	ENDOESOPHAGEAL	T-56000		C0014876
SCT	2739003	Endometrium	ENDOMETRIUM	T-83400		C0014180
SCT	53342003	Endo-nasal	ENDONASAL	T-21300		C0225425
SCT	18962004	Endo-nasopharyngeal	ENDONASOPHARYNYX	T-23050		C0225497
SCT	34402009	Endo-rectal	ENDORECTAL	T-59600		C0034896
SCT	64033007	Endo-renal	ENDORENAL	T-71000		C0022646
SCT	87953007	Endo-ureteric	ENDOURETERIC	T-73000		C0041951
SCT	13648007	Endo-urethral	ENDOURETHRAL	T-75000		C0041967
SCT	76784001	Endo-vaginal	ENDOVAGINAL	T-82000		C0042232
SCT	59820001	Endo-vascular	ENDOVASCULAR	T-40000		C0005847
SCT	29092000	Endo-venous	ENDOVENOUS	T-48000		C0042449
SCT	48367006	Endo-vesical	ENDOVESICAL	T-74250		C0227710
SCT	38266002	Entire body	WHOLEBODY	T-D0010		C0229960
SCT	87644002	Epididymis	EPIDIDYMIS	T-95000	18255	C0014533
SCT	27947004	Epigastric region	EPIGASTRIC	T-D4200		C0230185
SCT	32849002	Esophagus	ESOPHAGUS	T-56000		C0014876
SCT	110861005	Esophagus, stomach and duodenum		T-DD163		C1268410
SCT	84301002	External auditory canal	EAC	T-AB200		C0013444
SCT	22286001	External carotid artery	ECA	T-45200		C0007275
SCT	113269004	External iliac artery	EXTILIACA	T-46910		C0226398
SCT	63507001	External iliac vein	EXTILIACV	T-48930		C0226761
SCT	71585003	External jugular vein	EXTJUGV	T-48160	13110	C0226543
SCT	66019005	Extremity	EXTREMITY	T-D0300		C0015385
SCT	81745001	Eye	EYE	T-AA000		C0015392
SCT	80243003	Eyelid	EYELID	T-AA810		C0015426
SCT	371398005	Eye region		T-D0801		C0700042
SCT	89545001	Face	FACE	T-D1200		C0015450
SCT	23074001	Facial artery	FACIALA	T-45240		C0226109
SCT	91397008	Facial bones		T-11196		C0015455
SCT	7657000	Femoral artery	FEMORALA	T-47400		C0015801
SCT	83419000	Femoral vein	FEMORALV	T-49410		C0015809
SCT	71341001	Femur	FEMUR	T-12710		C0015811
		Fetal arm	FETALARM
		Fetal digit	FETALDIGIT
		Fetal heart	FETALHEART		63931
		Fetal leg	FETALLEG
		Fetal pole	FETALPOLE
SCT	87342007	Fibula	FIBULA	T-12750		C0016068
SCT	7569003	Finger	FINGER	T-D8800		C0016129
SCT	58602004	Flank	FLANK	T-D2310		C0230171
SCT	79361005	Fontanel of skull	FONTANEL	T-15200		C0224548
SCT	56459004	Foot	FOOT	T-D9700		C0016504
SCT	14975008	Forearm	FOREARM	T-D8500		C0016536
SCT	35918002	Fourth ventricle	4THVENTRICLE	T-A1820		C0149556
SCT	28231008	Gallbladder	GALLBLADDER	T-63000		C0016976
SCT	110568007	Gastric vein	GASTRICV	T-48820		C0750610
SCT	128559007	Genicular artery	GENICULARA	T-47490		C0447108
SCT	300571009	Gestational sac	GESTSAC	F-03FC9		C0577295
SCT	46862004	Gluteal region	GLUTEAL	T-D2600		C0006497
SCT	5928000	Great cardiac vein		T-48420		C0226659
SCT	60734001	Great saphenous vein	GSV	T-49530	21376	C0392907
SCT	85562004	Hand	HAND	T-D8700		C0018563
SCT	69536005	Head	HEAD	T-D1100		C0018670
SCT	774007	Head and Neck	HEADNECK	T-D1000		C0460004
SCT	80891009	Heart	HEART	T-32000		C0018787
SCT	76015000	Hepatic artery	HEPATICA	T-46420		C0019145
SCT	8993003	Hepatic vein	HEPATICV	T-48720		C0019155
SCT	24136001	Hip joint	HIP	T-15710		C0019558
SCT	85050009	Humerus	HUMERUS	T-12410		C0020164
SCT	128560002	Hunterian perforating vein		T-4942A		C1267526
SCT	11708003	Hypogastric region	HYPOGASTRIC	T-D4240		C0230189
SCT	81502006	Hypopharynx	HYPOPHARYNX	T-55300		C0020629
SCT	34516001	Ileum	ILEUM	T-58600		C0020885
SCT	299716001	Iliac and/or femoral artery		T-41068		C0576469
SCT	10293006	Iliac artery	ILIACA	T-46700		C0020887
SCT	244411005	Iliac vein	ILIACV	T-4940E		C0020888
SCT	22356005	Ilium	ILIUM	T-12340		C0020889
SCT	195416006	Inferior cardiac vein		T-484A4		C0226664
SCT	51249003	Inferior left pulmonary vein		T-48540		C0226686
SCT	33795007	Inferior mesenteric artery	INFMESA	T-46520		C0162860
SCT	113273001	Inferior right pulmonary vein		T-48520		C0226676
SCT	64131007	Inferior vena cava	INFVENACAVA	T-48710		C0042458
SCT	26893007	Inguinal region	INGUINAL	T-D7000		C0018246
SCT	12691009	Innominate artery	INNOMINATEA	T-46010		C0006094
SCT	8887007	Innominate vein	INNOMINATEV	T-48620		C0006095
SCT	361078006	Internal Auditory Canal	IAC	T-AB959		C1283773
SCT	86117002	Internal carotid artery	ICA	T-45300		C0007276
SCT	90024005	Internal iliac artery	INTILIACA	T-46740		C0226364
SCT	12123001	Internal jugular vein	INTJUGULARV	T-48170		C0226550
SCT	69327007	Internal mammary artery	INTMAMMARYA	T-46200		C0226276
SCT	818987002	Intra-abdominopelvic				C0506230
SCT	131183008	Intra-articular		G-A15A		C0442108
SCT	1101003	Intracranial	INTRACRANIAL	T-D1400		C0230041
SCT	32849002	Intra-esophageal		T-56000		C0014876
SCT	816989007	Intra-pelvic				C5230966
SCT	661005	Jaw region	JAW	T-D1213		C3887617
SCT	21306003	Jejunum	JEJUNUM	T-58400		C0022378
SCT	39352004	Joint	JOINT	T-15001		C0022417
SCT	128563000	Juxtaposed atrial appendage		D4-31052		C1290478
SCT	64033007	Kidney	KIDNEY	T-71000		C0022646
SCT	72696002	Knee	KNEE	T-D9200		C0022742
SCT	59749000	Lacrimal artery	LACRIMALA	T-45410		C0226171
SCT	14742008	Large intestine	LARGEINTESTINE	T-59000		C0021851
SCT	4596009	Larynx	LARYNX	T-24100		C0023078
SCT	66720007	Lateral Ventricle	LATVENTRICLE	T-A1650	78448	C0152279
SCT	82471001	Left atrium	LATRIUM	T-32300		C0225860
SCT	33626005	Left auricular appendage		T-32310		C0225861
SCT	113270003	Left femoral artery	LFEMORALA	T-47420		C0226448
SCT	273202007	Left hepatic vein	LHEPATICV	T-48727	14339	C0226708
SCT	133945003	Left hypochondriac region	LHYPOCHONDRIAC	T-D4211		C0738591
SCT	85119005	Left inguinal region	LINGUINAL	T-D7020		C0230321
SCT	68505006	Left lower quadrant of abdomen	LLQ	T-D4140		C0230180
SCT	1017210004	Left lumbar region	LLUMBAR			C5439491
SCT	70253006	Left portal vein	LPORTALV	T-48814	15415	C0933785
SCT	50408007	Left pulmonary artery	LPULMONARYA	T-44400		C0226069
SCT	86367003	Left upper quadrant of abdomen	LUQ	T-D4130		C0230179
SCT	87878005	Left ventricle	LVENTRICLE	T-32600		C0225897
SCT	70238003	Left ventricle inflow tract		T-32640		C0225911
SCT	13418002	Left ventricle outflow tract		T-32650		C0225912
SCT	113264009	Lingual artery	LINGUALA	T-45230		C0226104
SCT	10200004	Liver	LIVER	T-62000		C0023884
SCT	19100000	Lower inner quadrant of breast		T-04003		C0222597
SCT	30021000	Lower leg	LOWERLEG	T-D9400		C1140621
SCT	61685007	Lower limb	LOWERLIMB	T-D9000		C0023216
SCT	33564002	Lower outer quadrant of breast		T-04005		C0222599
SCT	63337009	Lower trunk	LOWERTRUNK	T-D2020		C0230094
SCT	34635009	Lumbar artery	LUMBARA	T-46960		C0226408
SCT	52612000	Lumbar region	LUMBAR	T-D2300		C0024090
SCT	122496007	Lumbar spine	LSPINE	T-11503		C0024091
SCT	1217253001	Lumbo-sacral spine	LSSPINE			C5687876
SCT	91747007	Lumen of blood vessel	LUMEN	T-40230		C0524424
SCT	39607008	Lung	LUNG	T-28000		C0024109
SCT	91609006	Mandible	MANDIBLE	T-11180		C0024687
SCT	59066005	Mastoid bone	MASTOID	T-11133		C0446908
SCT	70925003	Maxilla	MAXILLA	T-11170		C0024947
SCT	72410000	Mediastinum	MEDIASTINUM	T-D3300		C0025066
SCT	86570000	Mesenteric artery	MESENTRICA	T-46500		C0025465
SCT	128583004	Mesenteric vein	MESENTRICV	T-4884A		C0025473
SCT	17232002	Middle cerebral artery	MCA	T-45600	50079	C0149566
SCT	273099000	Middle hepatic vein	MIDHEPATICV	T-48726	14340	C0226707
SCT	243977002	Morisons pouch	MORISONSPOUCH	T-D4434		C0446609
SCT	123851003	Mouth	MOUTH	T-D0662		C0230028
SCT	102292000	Muscle of lower limb		T-14668		C0584890
SCT	30608006	Muscle of upper limb		T-13600		C0559498
SCT	74386004	Nasal bone		T-11149		C0027422
SCT	360955006	Nasopharynx	NASOPHARYNX	T-2300C		C1283682
SCT	45048000	Neck	NECK	T-D1600		C0027530
SCT	416319003	Neck, Chest, Abdomen and Pelvis	NECKCHESTABDPELV	R-FAB54		C1562776
SCT	416152001	Neck, Chest and Abdomen	NECKCHESTABDOMEN	R-FAB53		C1562378
SCT	417437006	Neck and Chest	NECKCHEST	R-FAB52		C1562459
SCT	45206002	Nose	NOSE	T-21000		C0028429
SCT	31145008	Occipital artery	OCCPITALA	T-45250		C0226117
SCT	32114007	Occipital vein	OCCIPTALV	T-48214		C0226579
SCT	113346000	Omental bursa		T-D4450		C0230212
SCT	27398004	Omentum		T-D4600		C0028977
SCT	53549008	Ophthalmic artery	OPHTHALMICA	T-45400		C0029078
SCT	55024004	Optic canal	OPTICCANAL	T-11102		C0450102
SCT	363654007	Orbital structure	ORBIT	T-D14AE		C0029180
SCT	15497006	Ovary	OVARY	T-87000		C0029939
SCT	15776009	Pancreas	PANCREAS	T-65000		C0030274
SCT	69930009	Pancreatic duct	PANCREATICDUCT	T-65010		C0030288
SCT	110621006	Pancreatic duct and bile duct systems	PANCBILEDUCT	T-65600		C1267614
SCT	2095001	Paranasal sinus		T-22000	SINUS	C0030471
SCT	91691001	Parasternal	PARASTERNAL	T-D3136		C0458345
SCT	111002	Parathyroid	PARATHYROID	T-B7000		C0030518
SCT	45289007	Parotid gland	PAROTID	T-61100		C0030580
SCT	64234005	Patella	PATELLA	T-12730		C0030647
SCT	83330001	Patent ductus arteriosus		D4-32012		C0013274
SCT	816092008	Pelvis	PELVIS			C5230955
SCT	1231522001	Pelvis and lower extremities	PELVISLOWEXTREMT			C5688969
SCT	282044005	Penile artery	PENILEA	T-46807	66318	C0559907
SCT	18911002	Penis	PENIS	T-91000		C0030851
SCT	38864007	Perineum	PERINEUM	T-D2700		C0031066
SCT	8821006	Peroneal artery	PERONEALA	T-47630		C0226476
SCT	706342009	Phantom	PHANTOM	R-FE0C7		C0282611
SCT	54066008	Pharynx	PHARYNX	T-55000		C0031354
SCT	312535008	Pharynx and larynx	PHARYNXLARYNX	T-20101		C0729889
SCT	78067005	Placenta	PLACENTA	T-F1100		C0032043
SCT	43899006	Popliteal artery	POPLITEALA	T-47500		C0032649
SCT	32361000	Popliteal fossa	POPLITEALFOSSA	T-D9310		C0230436
SCT	56849005	Popliteal vein	POPLITEALV	T-49650	44327	C0032652
SCT	32764006	Portal vein	PORTALV	T-48810	66645	C0032718
SCT	70382005	Posterior cerebral artery	PCA	T-45900	50583	C0149576
SCT	43119007	Posterior communicating artery	POSCOMMA	T-45320		C0149559
SCT	128569001	Posterior medial tributary		T-49535		C1267527
SCT	13363002	Posterior tibial artery	POSTIBIALA	T-47600		C0086835
SCT	14944004	Primitive aorta		T-F7001		C0231136
SCT	91707000	Primitive pulmonary artery		T-F7040		C0231157
SCT	31677005	Profunda femoris artery	PROFFEMA	T-47440	20741	C0226455
SCT	23438002	Profunda femoris vein	PROFFEMV	T-49660	51041	C0226841
SCT	41216001	Prostate	PROSTATE	T-92000		C0033572
SCT	111289009	Pulmonary arteriovenous fistula		D3-40208		C0155675
SCT	81040000	Pulmonary artery	PULMONARYA	T-44000		C0034052
SCT	128584005	Pulmonary artery conduit		D4-33142		C1290491
SCT	128586007	Pulmonary chamber of cor triatriatum		T-32190		C1267246
SCT	122972007	Pulmonary vein	PULMONARYV	T-48581		C0034090
SCT	128566008	Pulmonary vein confluence		D4-33512		C1290492
SCT	128567004	Pulmonary venous atrium		D4-33514		C1290493
SCT	45631007	Radial artery	RADIALA	T-47300		C0162857
SCT	62413002	Radius	RADIUS	T-12420		C0034627
SCT	110535000	Radius and ulna	RADIUSULNA	T-12403		C1267080
SCT	53843000	Rectouterine pouch	CULDESAC	T-D6407		C0013075
SCT	34402009	Rectum	RECTUM	T-59600		C0034896
SCT	2841007	Renal artery	RENALA	T-46600		C0035065
SCT	25990002	Renal pelvis		T-72000		C0227666
SCT	56400007	Renal vein	RENALV	T-48740		C0035092
SCT	82849001	Retroperitoneum	RETROPERITONEUM	T-D4900		C0035359
SCT	113197003	Rib	RIB	T-11300		C0035561
SCT	73829009	Right atrium	RATRIUM	T-32200		C0225844
SCT	68300000	Right auricular appendage		T-32210		C0225845
SCT	69833005	Right femoral artery	RFEMORALA	T-47410		C0226447
SCT	272998002	Right hepatic vein	RHEPATICV	T-48725	14338	C0226706
SCT	133946002	Right hypochondriac region	RHYPOCHONDRIAC	T-D4212		C0738590
SCT	37117007	Right inguinal region	RINGUINAL	T-D7010		C0230318
SCT	48544008	Right lower quadrant of abdomen	RLQ	T-D4120		C0230178
SCT	1017211000	Right lumbar region	RLUMBAR			C5439490
SCT	73931004	Right portal vein	RPORTALV	T-48813	15414	C0226730
SCT	78480002	Right pulmonary artery	RPULMONARYA	T-44200		C0226054
SCT	50519007	Right upper quadrant of abdomen	RUQ	T-D4110		C0230177
SCT	53085002	Right ventricle	RVENTRICLE	T-32500		C0225883
SCT	8017000	Right ventricle inflow		T-32540		C0225891
SCT	44627009	Right ventricle outflow tract		T-32550		C0225892
SCT	39723000	Sacroiliac joint	SIJOINT	T-15680		C0036036
SCT	54735007	Sacrum	SSPINE	T-11AD0		C0036037
SCT	128587003	Saphenofemoral junction	SFJ	T-D930A		C0447132
SCT	362072009	Saphenous vein	SAPHENOUSV	T-4940B		C0036186
SCT	41695006	Scalp	SCALP	T-D1160		C0036270
SCT	79601000	Scapula	SCAPULA	T-12280		C0036277
SCT	18619003	Sclera	SCLERA	T-AA110		C0036410
SCT	20233005	Scrotum	SCROTUM	T-98000		C0036471
SCT	42575006	Sella turcica	SELLA	T-D1460		C0036609
SCT	64739004	Seminal vesicle	SEMVESICLE	T-93000	19386	C0036628
SCT	58742003	Sesamoid bones of foot	SESAMOID	T-12980		C0278418
SCT	16982005	Shoulder	SHOULDER	T-D2220		C0037004
SCT	60184004	Sigmoid colon	SIGMOID	T-59470		C0227391
SCT	89546000	Skull	SKULL	T-11100		C0037303
SCT	30315005	Small intestine	SMALLINTESTINE	T-58000		C0021852
SCT	2748008	Spinal cord	SPINALCORD	T-A7010		C0037925
SCT	421060004	Spine	SPINE	T-D04FF		C0037949
SCT	78961009	Spleen	SPLEEN	T-C3000		C0037993
SCT	22083002	Splenic artery	SPLENICA	T-46460		C0037996
SCT	35819009	Splenic vein	SPLENICV	T-48890		C0038001
SCT	7844006	Sternoclavicular joint	SCJOINT	T-15610		C0038291
SCT	56873002	Sternum	STERNUM	T-11210		C0038293
SCT	69695003	Stomach	STOMACH	T-57000		C0038351
SCT	36765005	Subclavian artery	SUBCLAVIANA	T-46100		C0038530
SCT	9454009	Subclavian vein	SUBCLAVIANV	T-48330		C0038532
SCT	19695001	Subcostal	SUBCOSTAL	T-D4210		C0442184
SCT	5713008	Submandibular area		T-D1603		C0230070
SCT	54019009	Submandibular gland	SUBMANDIBULAR	T-61300		C0038556
SCT	170887008	Submental		T-D161E		C0931905
SCT	5076001	Subxiphoid		T-D3213		C0230144
SCT	181349008	Superficial femoral artery	SFA	T-47403	323777	C0447106
SCT	397364003	Superficial femoral vein	SFV	G-035A		C1301369
SCT	15672000	Superficial temporal artery		T-45270		C0226130
SCT	43863001	Superior left pulmonary vein	LSUPPULMONARYV	T-48530		C0226682
SCT	42258001	Superior mesenteric artery	SMA	T-46510		C0162861
SCT	8629005	Superior right pulmonary vein	RSUPPULMONARYV	T-48510		C0226671
SCT	72021004	Superior thyroid artery	SUPTHYROIDA	T-45210		C0226093
SCT	48345005	Superior vena cava	SVC	T-48610		C0042459
SCT	77621008	Supraclavicular region of neck	SUPRACLAVICULAR	T-D1620		C0230078
SCT	11708003	Suprapubic region	SUPRAPUBIC	T-D4240		C0230189
SCT	26493002	Suprasternal notch		T-11218		C0222769
SCT	128589000	Systemic collateral artery to lung		T-44007		C0345096
SCT	128568009	Systemic venous atrium		D4-33516		C1290494
SCT	27949001	Tarsal joint		T-15770		C0039318
SCT	53620006	Temporomandibular joint	TMJ	T-15290		C0039493
SCT	40689003	Testis	TESTIS	T-94000		C0039597
SCT	42695009	Thalamus	THALAMUS	T-A4000	62007	C0039729
SCT	68367000	Thigh	THIGH	T-D9100		C0039866
SCT	49841001	Third ventricle	3RDVENTRICLE	T-A1740		C0149555
SCT	113262008	Thoracic aorta	THORACICAORTA	T-42070		C1522460
SCT	122495006	Thoracic spine	TSPINE	T-11502		C0581269
SCT	1217256009	Thoraco-lumbar spine	TLSPINE			C5687878
SCT	816094009	Chest	THORAX			C5230958
SCT	76505004	Thumb	THUMB	T-D8810		C0040067
SCT	9875009	Thymus	THYMUS	T-C8000		C0040113
SCT	69748006	Thyroid	THYROID	T-B6000		C0040132
SCT	12611008	Tibia	TIBIA	T-12740		C0040184
SCT	110536004	Tibia and fibula	TIBIAFIBULA	T-12701		C0224692
SCT	29707007	Toe	TOE	T-D9800		C0040357
SCT	21974007	Tongue	TONGUE	T-53000		C0040408
SCT	44567001	Trachea	TRACHEA	T-25000		C0040578
SCT	110726009	Trachea and bronchus	TRACHEABRONCHUS	T-DD006		C1268276
SCT	485005	Transverse colon	TRANSVERSECOLON	T-59440		C0227386
SCT	61959006	Truncus arteriosus communis		D4-31400		C0041207
SCT	57850000	Truncus coeliacus		T-46400		C0007569
SCT	22943007	Trunk	TRUNK	T-D2000		C0460005
SCT	23416004	Ulna	ULNA	T-12430		C0041600
SCT	44984001	Ulnar artery	ULNARA	T-47200		C0162858
SCT	50536004	Umbilical artery	UMBILICALA	T-F1810		C0041632
SCT	90290004	Umbilical region	UMBILICAL	T-D4230		C0041638
SCT	284639000	Umbilical vein	UMBILICALV	T-48832		C0226734
SCT	40983000	Upper arm	UPPERARM	T-D8200		C0446516
SCT	77831004	Upper inner quadrant of breast		T-04002		C0222596
SCT	53120007	Upper limb	UPPERLIMB	T-D8000		C1140618
SCT	76365002	Upper outer quadrant of breast		T-04004		C0222598
SCT	67734004	Upper trunk	UPPERTRUNK	T-D2010		C0230093
SCT	431491007	Upper urinary tract	UPRURINARYTRACT	T-7000B		C2317509
SCT	87953007	Ureter	URETER	T-73000		C0041951
SCT	13648007	Urethra	URETHRA	T-75000		C0041967
SCT	35039007	Uterus	UTERUS	T-83000		C0042149
SCT	110639002	Uterus and fallopian tubes		T-88920		C1267676
SCT	76784001	Vagina	VAGINA	T-82000		C0042232
SCT	312288001	Vascular graft		T-D000F		C1289794
SCT	29092000	Vein	VEIN	T-48000		C0042449
SCT	34340008	Venous network		T-48003		C0226503
SCT	21814001	Ventricle		T-32400		C0018827
SCT	85234005	Vertebral artery	VERTEBRALA	T-45700		C0042559
SCT	110517009	Vertebral column and cranium		T-11011		C1266914
SCT	45292006	Vulva	VULVA	T-81000		C0042993
SCT	74670003	Wrist joint	WRIST	T-15460		C1322271
SCT	13881006	Zygoma	ZYGOMA	T-11166		C0043539

Note

In prior versions of this table, different codes were used for some concepts; see PS3.16-2011, PS3.16-2025d.

Table L-2. Corresponding Codes and Terms for Large Animals

Coding Scheme Designator	Code Value	Code Meaning	Body Part Examined	SNOMED-RT ID (Retired)	UMLS Concept Unique ID
SCT	818981001	Abdomen	ABDOMEN		C5231290
SCT	42694008	All legs	LEGS	T-D8030	C0230331
SCT	62555009	Atlantal-axial joint	ATLANTOAXIAL	T-15317	C0224585
SCT	20292002	Atlanto-occipital joint	ATLANTOOCCIPITAL	T-15311	C0004169
SCT	89837001	Bladder	BLADDER	T-74000	C0005682
SCT	82474009	Calcaneal tubercle		T-12771	C0223921
SCT	8205005	Carpus	CARPUS	T-D8600	C0043262
SCT	122494005	Cervical spine	CSPINE	T-11501	C0728985
SCT	1217257000	Cervico-thoracic spine	CTSPINE		C5687879
SCT	816094009	Chest	CHEST		C5230958
SCT	416550000	Chest and Abdomen	CHESTABDOMEN	R-FAB55	C1442171
SCT	18149002	Coccygeal vertrebrae	TAIL	T-11B00	C0223616
SCT	71854001	Colon	COLON	T-59300	C0009368
SCT	82680008	Digit	DIGIT	T-D0310	C0582802
UMLS	C3669027	Distal phalanx	DISTALPHALANX		C3669027
SCT	16953009	Elbow joint	ELBOW	T-15430	C0013770
SCT	38266002	Entire body	WHOLEBODY	T-D0010	C0229960
SCT	32849002	Esophagus	ESOPHAGUS	T-56000	C0014876
SCT	71341001	Femur	FEMUR	T-12710	C0015811
SCT	13190002	Fetlock of forelimb	FOREFETLOCK	T-D8640	C0521445
SCT	113351006	Fetlock of hindlimb	HINDFETLOCK	T-D9540	C0521446
SCT	87342007	Fibula	FIBULA	T-12750	C0016068
SCT	419176008	Forefoot	FOREFOOT	T-D04F2	C1630649
SCT	55060009	Frontal sinus	FRONTALSINUS	T-22200	C0016734
SCT	416804009	Hindfoot	HINDFOOT	T-D9713	C0230459
SCT	24136001	Hip joint	HIP	T-15710	C0019558
SCT	85050009	Humerus	HUMERUS	T-12410	C0020164
SCT	122496007	Lumbar spine	LSPINE	T-11503	C0024091
SCT	1217253001	Lumbo-sacral spine	LSSPINE		C5687876
SCT	91609006	Mandible	MANDIBLE	T-11180	C0024687
SCT	88176008	Mandibular dental arch		T-54170	C0227027
SCT	442274007	Mandibular incisor teeth		T-540EE	C2711599
SCT	39481002	Maxillary dental arch		T-54160	C0227026
SCT	442100006	Maxillary incisor teeth		T-540ED	C2711204
SCT	36455000	Metacarpus	METACARPUS	T-12540	C0025526
SCT	280711000	Metatarsus	METATARSUS	T-12847	C0025590
SCT	30518006	Navicular of forefoot	FORENAVICULAR	T-12450	C0223724
SCT	75772009	Navicular of hindfoot	HINDNAVICULAR	T-12800	C0223947
SCT	363654007	Orbital structure	ORBIT	T-D14AE	C0029180
SCT	2095001	Paranasal sinus		T-22000	C0030471
SCT	31329001	Pastern of forefoot	FOREPASTERN	T-D8650	C0230368
SCT	18525008	Pastern of hindfoot	HINDPASTERN	T-D9550	C0230455
SCT	64234005	Patella	PATELLA	T-12730	C0030647
SCT	816092008	Pelvis	PELVIS		C5230955
SCT	62413002	Radius	RADIUS	T-12420	C0034627
SCT	110535000	Radius and ulna	RADIUSULNA	T-12403	C1267080
SCT	54735007	Sacrum	SSPINE	T-11AD0	C0036037
SCT	16982005	Shoulder	SHOULDER	T-D2220	C0037004
SCT	89546000	Skull	SKULL	T-11100	C0037303
SCT	116010006	Stiffle	STIFLE	T-15728	C1456798
SCT	108371006	Tarsus	TARSUS	T-12761	C0039316
SCT	122495006	Thoracic spine	TSPINE	T-11502	C0581269
SCT	1217256009	Thoraco-lumbar spine	TLSPINE		C5687878
SCT	12611008	Tibia	TIBIA	T-12740	C0040184
SCT	110536004	Tibia and fibula	TIBIAFIBULA	T-12701	C0224692
SCT	62834003	Upper gastro-intestinal tract	UGITRACT	T-50110	C3203348
SCT	23416004	Ulna	ULNA	T-12430	C0041600
SCT	13648007	Urethra	URETHRA	T-75000	C0041967
SCT	431938005	Urinary tract	URINARYTRACT	T-7000C	C2316969
SCT	53036007	Wing	WING	T-D8040	C0043189

Note

In prior versions of this table, different codes were used for some concepts; see PS3.16-2011.

Table L-3. Corresponding Codes And Terms for Small Animal Use

Coding Scheme Designator	Code Value	Code Meaning	Body Part Examined	SNOMED-RT ID (Retired)	FMA ID	Mouse Anatomy ID	NCIt ID	Uberon ID	UMLS Concept Unique ID
SCT	23451007	Adrenal gland	ADRENAL	T-B3000	9604	0000116	C12666	0002369	C0001625
SCT	70258002	Ankle joint	ANKLE	T-15750	35195	0000463	C32078	0001488	C0003087
SCT	15825003	Aorta	AORTA	T-42000	3734	0000062	C12669	0000947	C0003483
SCT	89837001	Bladder	BLADDER	T-74000	15900	0000380	C12414	0001255	C0005682
SCT	12738006	Brain	BRAIN	T-A0100	50801	0000168	C12439	0000955	C0006104
SCT	76752008	Breast	BREAST	T-04000	57983	0000145	C12367	0001911	C0006141
SCT	955009	Bronchus	BRONCHUS	T-26000	7409	0000436	C12683	0002185	C0006255
SCT	60819002	Buccal region of face	CHEEK	T-D1206	46476	0002475	C13070	0001567	C0007966
SCT	80144004	Calcaneus	CALCANEUS	T-12770	24496	0001348	C32250	0001450	C0006655
SCT	69105007	Carotid Artery	CAROTID	T-45010		0001925	C12687	0005396	C0007272
SCT	113305005	Cerebellum	CEREBELLUM	T-A6000	67944	0000198	C12445	0002037	C0007765
SCT	71252005	Cervix	CERVIX	T-83200	17740	0000392	C12311	0000002	C0007874
SCT	51299004	Clavicle	CLAVICLE	T-12310	13321	0001329	C12695	0001105	C0008913
SCT	64688005	Coccyx	COCCYX	T-11BF0	20229	0001420	C12696	0001095	C0009194
SCT	71854001	Colon	COLON	T-59300	14543	0000335	C12382	0001155	C0009368
SCT	28726007	Cornea	CORNEA	T-AA200	58238	0000266	C12342	0000964	C0010031
SCT	41801008	Coronary artery	CORONARYARTERY	T-43000	49893	0002453	C12843	0001621	C0205042
SCT	82680008	Digit	DIGIT	T-D0310	85518	0000690	C40186	0002544	C0582802
SCT	38848004	Duodenum	DUODENUM	T-58200	7206	0000338	C12263	0002114	C0013303
SCT	16953009	Elbow joint	ELBOW	T-15430	35289	0000451	C32497	0001490	C0013770
SCT	32849002	Esophagus	ESOPHAGUS	T-56000	7131	0000352	C12389	0001043	C0014876
SCT	66019005	Extremity	EXTREMITY	T-D0300	7182	0000007	C12429	0002101	C0015385
SCT	81745001	Eye	EYE	T-AA000	54448	0000261	C12401	0000019	C0015392
SCT	80243003	Eyelid	EYELID	T-AA810	54437	0000268	C12713	0001711	C0015426
SCT	89545001	Face	FACE	T-D1200	24728	0002473	C13071	0001456	C0015450
SCT	71341001	Femur	FEMUR	T-12710	9611	0001359	C12717	0000981	C0015811
SCT	87342007	Fibula	FIBULA	T-12750	24479	0001360	C12718	0001446	C0016068
SCT	7569003	Finger	FINGER	T-D8800	9666	0000041	C32608	0002389	C0016129
SCT	56459004	Foot	FOOT	T-D9700	9664	0000044	C32622	0002387	C0016504
SCT	55060009	Frontal sinus	FRONTALSINUS	T-22200	57417	0001793	C12277	0001760	C0016734
SCT	28231008	Gallbladder	GALLBLADDER	T-63000	7202	0000356	C12377	0002110	C0016976
SCT	85562004	Hand	HAND	T-D8700	9712	0000037	C32712	0002398	C0018563
SCT	69536005	Head	HEAD	T-D1100	7154	0000023	C12419	0000033	C0018670
SCT	774007	Head and Neck	HEADNECK	T-D1000		0000006	C12418	0007811	C0460004
SCT	80891009	Heart	HEART	T-32000	7088	0000072	C12727	0000948	C0018787
SCT	24136001	Hip joint	HIP	T-15710	35178	0000470	C32742	0001486	C0019558
SCT	85050009	Humerus	HUMERUS	T-12410	13303	0001356	C12731	0000976	C0020164
SCT	34516001	Ileum	ILEUM	T-58600	7208	0000339	C12387	0002116	C0020885
SCT	22356005	Ilium	ILIUM	T-12340	16589	0001336	C32765	0001273	C0020889
SCT	661005	Jaw region	JAW	T-D1213	54396	0001905	C48821	0001708	C3887617
SCT	21306003	Jejunum	JEJUNUM	T-58400	7207	0000340	C12388	0002115	C0022378
SCT	64033007	Kidney	KIDNEY	T-71000	7203	0000368	C12415	0002113	C0022646
SCT	10200004	Liver	LIVER	T-62000	7197	0000358	C12392	0002107	C0023884
SCT	30021000	Lower leg	LOWERLEG	T-D9400	24979	0000047	C32974	0000978	C1140621
SCT	39607008	Lung	LUNG	T-28000	7195	0000415	C12468	0002048	C0024109
SCT	91609006	Mandible	MANDIBLE	T-11180	52748	0001487	C12290	0001684	C0024687
SCT	70925003	Maxilla	MAXILLA	T-11170	9711	0001491	C26470	0002397	C0024947
SCT	30518006	Navicular of forefoot	FORENAVICULAR	T-12450	33311	0002555	C12854	0001427	C0223724
SCT	45048000	Neck	NECK	T-D1600	7155	0000024	C13063	0000974	C0027530
SCT	363654007	Orbital structure	ORBIT	T-D14AE	53074	0002482	C12347	0001697	C0029180
SCT	15497006	Ovary	OVARY	T-87000	7209	0000384	C12404	0000992	C0029939
SCT	15776009	Pancreas	PANCREAS	T-65000	7198	0000120	C12393	0001264	C0030274
SCT	45289007	Parotid gland	PAROTID	T-61100	59790	0001585	C12427	0001831	C0030580
SCT	64234005	Patella	PATELLA	T-12730	24485	0001374	C33282	0002446	C0030647
SCT	816092008	Pelvis	PELVIS		9578	0000030	C12767	0002355	C5230955
SCT	18911002	Penis	PENIS	T-91000	9707	0000408	C12409	0000989	C0030851
SCT	54066008	Pharynx	PHARYNX	T-55000	46688	0000432	C12425	0001042	C0031354
SCT	62413002	Radius	RADIUS	T-12420	23463	0001357	C12777	0001423	C0034627
SCT	34402009	Rectum	RECTUM	T-59600	14544	0000336	C12390	0001052	C0034896
SCT	113197003	Rib	RIB	T-11300	7574	0000315	C12782	0002228	C0035561
SCT	79601000	Scapula	SCAPULA	T-12280	13394	0001330	C12783	0006849	C0036277
SCT	18619003	Sclera	SCLERA	T-AA110	58269	0000280	C12784	0001773	C0036410
SCT	20233005	Scrotum	SCROTUM	T-98000	18252	0000409	C12785	0001300	C0036471
SCT	16982005	Shoulder	SHOULDER	T-D2220	25202	0000038	C25203	0001467	C0037004
SCT	89546000	Skull	SKULL	T-11100	46565	0000316	C12789	0003128	C0037303
SCT	78961009	Spleen	SPLEEN	T-C3000	7196	0000141	C12432	0002106	C0037993
SCT	56873002	Sternum	STERNUM	T-11210	7485	0001331	C12793	0000975	C0038293
SCT	53620006	Temporomandibular joint	TMJ	T-15290	54832	0002899	C32888	0003700	C0039493
SCT	40689003	Testis	TESTIS	T-94000	7210	0000411	C12412	0000473	C0039597
SCT	68367000	Thigh	THIGH	T-D9100	24967	0000052	C33763	0000376	C0039866
SCT	76505004	Thumb	THUMB	T-D8810	24938	0000454	C52834	0001463	C0040067
SCT	9875009	Thymus	THYMUS	T-C8000	9607	0000142	C12433	0002370	C0040113
SCT	69748006	Thyroid	THYROID	T-B6000	9603	0000129	C12400	0002046	C0040132
SCT	12611008	Tibia	TIBIA	T-12740	24476	0001361	C12800	0000979	C0040184
SCT	29707007	Toe	TOE	T-D9800	25046	0000048	C33788	0001466	C0040357
SCT	21974007	Tongue	TONGUE	T-53000	54640	0000347	C12422	0001723	C0040408
SCT	23416004	Ulna	ULNA	T-12430	23466	0001358	C12809	0001424	C0041600
SCT	40983000	Upper arm	ARM	T-D8200	24890	0000033	C32141	0001460	C0446516
SCT	87953007	Ureter	URETER	T-73000	9704	0000378	C12416	0000056	C0041951
SCT	13648007	Urethra	URETHRA	T-75000	19667	0000379	C12417	0000057	C0041967
SCT	35039007	Uterus	UTERUS	T-83000	17558	0000389	C12405	0000995	C0042149
SCT	76784001	Vagina	VAGINA	T-82000	19949	0000394	C12407	0000996	C0042232
SCT	45292006	Vulva	VULVA	T-81000	20462	0000395	C12408	0000997	C0042993

Note

Since the Adult Mouse Anatomy Ontology is not in the UMLS, the mapping of Mouse Anatomy codes described here is an extract of a mapping to the NCI Thesaurus described in Hayamizu TF, de Coronado S, Fragoso G, Sioutos N, Kadin JA, Ringwald M. The mouse-human anatomy ontology mapping project. Database: The Journal of Biological Databases and Curation 2012;2012:bar066. doi:10.1093/database/bar066. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3308156/. The mapping files used can be found at ftp://ftp.informatics.jax.org/pub/reports/ma2ncit.obo.

The NCI Thesaurus codes were then used to look up corresponding concepts in UMLS, from which SNOMED and FMA codes were extracted automatically (and various conflicts and ambiguities resolved manually). The same correspondence to existing Body Part Examined values is used as in other tables in this Annex.

Another mapping project using the FMA as a reference ontology was not used, since the files were not available. See Zhang S, Bodenreider O. Alignment of Multiple Ontologies of Anatomy: Deriving Indirect Mappings from Direct Mappings to a Reference. AMIA Annual Symposium Proceedings 2005;2005:864-868 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1560629/.

Table L-4. Correspondence between Animal-specific and Generic NCI Thesaurus Codes

Code Meaning	Generic NCIt ID	Generic UMLS Concept UniqueID	Mouse-specific NCIt ID	Mouse-specific UMLS Concept UniqueID	Rat-specific NCIt ID	Rat-specific UMLS Concept UniqueID
Adrenal gland	C12666	C0001625	C22635	C1515888	C60540	C1882555
Ankle joint	C32078	C0003087
Aorta	C12669	C0003483	C23600		C60541	C1882561
Bladder	C12414	C0005682	C22729	C1511191	C60634	C1882899
Brain	C12439	C0006104	C22606	C1521713	C60544	C1882598
Breast	C12367	C0929301	C22549	C1512980	C60585	C1882771
Bronchus	C12683	C0006255	C24050	C1518036	C60546	C1882603
Buccal region of face	C13070	C0007966	C23972
Calcaneus	C32250	C0006655
Carotid Artery	C12687	C0007272	C23618
Cerebellum	C12445	C0007765	C22609	C1522278	C60550	C1882617
Cervix	C12311	C0007874			C60635	C1882903
Clavicle	C12695	C0008913	C23626
Coccyx	C12696	C0009194
Colon	C12382	C0009368	C22528	C1522281	C60554	C1882628
Cornea	C12342	C0010031	C22717	C2700413
Coronary artery	C12843	C0205042	C23773
Digit	C40186	C0582802
Duodenum	C12263	C0013303	C22523	C1522711	C60558	C1882648
Elbow joint	C32497	C0013770
Esophagus	C12389	C0014876	C22509	C1516967	C60563	C1882662
Extremity	C12429	C0015385	C23363
Eye	C12401	C0015392	C22711	C1517081	C60565	C1882665
Eyelid	C12713	C0015426	C23644		C60566	C1882666
Face	C13071	C0015450	C23973
Femur	C12717	C0015811	C23648		C60567	C1882669
Fibula	C12718	C0016068	C23649
Finger	C32608	C0016129
Foot	C32622	C0016504
Frontal sinus	C12277	C0016734	C23210
Gallbladder	C12377	C0016976	C23312
Hand	C32712	C0018563
Head	C12419	C0018670	C23353
Head and Neck	C12418	C0460004	C23352
Heart	C12727	C0018787	C22498	C1512359	C60571	C1882687
Hip joint	C32742	C0019558
Humerus	C12731	C0020164	C23662
Ileum	C12387	C0020885	C22525	C1522516	C60573	C1882700
Ilium	C32765	C0020889
Jaw region	C48821	C0022359	C22683	C1511239
Jejunum	C12388	C0022378	C22524	C1522714	C60575	C1882710
Kidney	C12415	C0022646	C22730	C1517673	C60577	C1882714
Liver	C12392	C0023884	C22515	C1517914	C60581	C1882726
Lower leg	C32974	C1140621
Lung	C12468	C0024109	C22600	C1518039	C60582	C1882727
Mandible	C12290	C0024687	C23223
Maxilla	C26470	C0024947
Navicular of forefoot	C12854	C0223724
Neck	C13063	C0027530	C23965
Orbital structure	C12347	C0029180	C23282		C60594	C1882803
Ovary	C12404	C0029939	C22656	C1518753	C60595	C1882808
Pancreas	C12393	C0030274	C24044	C1518865	C60597	C1882810
Parotid gland	C12427	C0030580	C22504	C1527051	C60600	C1882814
Patella	C33282	C0030647
Pelvis	C12767		C23698
Penis	C12409	C0030851	C22172	C1518951
Pharynx	C12425	C0031354	C22507	C1519041
Radius	C12777	C0034627	C23708
Rectum	C12390	C0034896	C22532	C1522513	C60609	C1882833
Rib	C12782	C0035561	C23713
Scapula	C12783	C0036277	C23714
Sclera	C12784	C0036410	C23715
Scrotum	C12785	C0036471	C22176	C1519206
Shoulder	C25203	C0037004
Skull	C12789	C0037303	C22684	C1522418
Spleen	C12432	C0037993	C22556	C1519474	C60621	C1882867
Sternum	C12793	C0038293	C23724		C60622	C1882873
Temporomandibular joint	C32888	C0039493
Testis	C12412	C0039597	C22178	C1515315	C60625	C1882878
Thigh	C33763	C0039866
Thumb	C52834	C0040067
Thymus	C12433	C0040113	C22553	C1515438	C60627	C1882880
Thyroid	C12400	C0040132	C22650	C1522142	C60628	C1882881
Tibia	C12800	C0040184	C23731
Toe	C33788	C0040357
Tongue	C12422	C0040408	C22508	C1519545	C60629	C1882882
Ulna	C12809	C0041600	C23740
Upper arm	C32141	C0446516
Ureter	C12416	C0041951	C22738	C1519822	C60632	C1882897
Urethra	C12417	C0041967	C22739	C1519824	C60633	C1882898
Uterus	C12405	C0042149	C22671	C1519876	C60636	C1882904
Vagina	C12407	C0042232	C22676	C1519910	C60637	C1882906
Vulva	C12408	C0042993	C22677	C1520067

Note

For the mouse, NCIt contains some duplicate anatomical concepts, including those which have been marked inactive and appear to have been replaced with improved codes for the "Mouse Models of Human Cancers Consortium" (MMHCC). Whenever duplicates were found, the MMHCC concept has been used in this table.

This table was produced by searching NCIt for all concepts that had "mouse" or "rat" in their concept name or synonyms, and then using that synonym with the word "mouse" or "rat" removed, to match against generic concept names.

The NCI Thesaurus codes were then used to look up corresponding concepts in UMLS, though not all of the concepts are included in UMLS yet (especially the MMHCC concepts).

Table L-5. Pairedness of Anatomic Concepts

SNOMED Code Value	Code Meaning	Paired Structure
818981001	Abdomen	N
818982008	Abdomen and Pelvis	N
7832008	Abdominal aorta	N
85856004	Acromioclavicular joint	Y
23451007	Adrenal gland	Y
77012006	Amniotic fluid	N
70258002	Ankle joint	Y
128585006	Anomalous pulmonary vein	N
128553008	Antecubital vein	Y
194996006	Anterior cardiac vein	N
60176003	Anterior cerebral artery	Y
8012006	Anterior communicating artery	N
17388009	Anterior spinal artery	N
68053000	Anterior tibial artery	Y
53505006	Anus	N
110612005	Anus, rectum and sigmoid colon	N
15825003	Aorta	N
57034009	Aortic arch	N
128551005	Aortic fistula	N
128564006	Apex of left ventricle	N
86598002	Apex of Lung	Y
128565007	Apex of right ventricle	N
66754008	Appendix	N
51114001	Artery	Y
54247002	Ascending aorta	N
9040008	Ascending colon	N
59652004	Atrium	Y
91470000	Axilla	Y
67937003	Axillary Artery	Y
68705008	Axillary vein	Y
72107004	Azygos vein	N
77568009	Back	N
128981007	Baffle	N
59011009	Basilar artery	N
28273000	Bile duct	N
34707002	Biliary tract	N
89837001	Bladder	N
110837003	Bladder and urethra	N
91830000	Body conduit	N
128548003	Boyd's perforating vein	Y
17137000	Brachial artery	Y
20115005	Brachial vein	Y
12738006	Brain	N
76752008	Breast	Y
34411009	Broad ligament	N
955009	Bronchus	Y
60819002	Buccal region of face	N
46862004	Buttock	Y
80144004	Calcaneus	Y
53840002	Calf of leg	Y
2334006	Calyx	N
113257007	Cardiovascular system	N
69105007	Carotid Artery	Y
21479005	Carotid Bulb	Y
57850000	Celiac artery	N
20699002	Cephalic vein	Y
113305005	Cerebellum	Y
88556005	Cerebral artery	Y
372073000	Cerebral hemisphere	Y
122494005	Cervical spine	N
1217257000	Cervico-thoracic spine	N
71252005	Cervix	N
60819002	Cheek	Y
816094009	Chest	N
416775004	Chest, Abdomen and Pelvis	N
416550000	Chest and Abdomen	N
80621003	Choroid Plexus	Y
11279006	Circle of Willis	N
51299004	Clavicle	Y
64688005	Coccyx	N
71854001	Colon	N
253276007	Common atrium	N
79741001	Common bile duct	N
32062004	Common carotid artery	Y
181347005	Common femoral artery	Y
397363009	Common femoral vein	Y
73634005	Common iliac artery	Y
46027005	Common iliac vein	Y
45503006	Common ventricle	N
128555001	Congenital coronary artery fistula to left atrium	N
128556000	Congenital coronary artery fistula to left ventricle	N
128557009	Congenital coronary artery fistula to right atrium	N
128558004	Congenital coronary artery fistula to right ventricle	N
111289009	Congenital pulmonary arteriovenous fistula	N
28726007	Cornea	Y
41801008	Coronary artery	N
90219004	Coronary sinus	N
281130003	Descending aorta	N
32622004	Descending colon	N
32672002	Descending thoracic aorta	N
128554002	Dodd's perforating vein	Y
38848004	Duodenum	N
117590005	Ear	Y
16953009	Elbow joint	Y
51114001	Endo-arterial	N
80891009	Endo-cardiac	N
32849002	Endo-esophageal	N
2739003	Endometrium	N
53342003	Endo-nasal	N
18962004	Endo-nasopharyngeal	N
34402009	Endo-rectal	N
64033007	Endo-renal	N
87953007	Endo-ureteric	N
13648007	Endo-urethral	N
76784001	Endo-vaginal	N
59820001	Endo-vascular	N
29092000	Endo-venous	N
48367006	Endo-vesical	N
38266002	Entire body	N
87644002	Epididymis	Y
27947004	Epigastric region	N
32849002	Esophagus	N
110861005	Esophagus, stomach and duodenum	N
84301002	External auditory canal	Y
22286001	External carotid artery	Y
113269004	External iliac artery	Y
63507001	External iliac vein	Y
71585003	External jugular vein	Y
66019005	Extremity	Y
81745001	Eye	Y
80243003	Eyelid	Y
89545001	Face	N
23074001	Facial artery	Y
91397008	Facial bones	N
7657000	Femoral artery	Y
83419000	Femoral vein	Y
71341001	Femur	Y
87342007	Fibula	Y
7569003	Finger	Y
58602004	Flank	N
79361005	Fontanel of skull	N
56459004	Foot	Y
14975008	Forearm	Y
35918002	Fourth ventricle	N
28231008	Gallbladder	N
110568007	Gastric vein	Y
128559007	Genicular artery	Y
300571009	Gestational sac	N
46862004	Gluteal region	Y
5928000	Great cardiac vein	N
60734001	Great saphenous vein	Y
85562004	Hand	Y
69536005	Head	N
774007	Head and Neck	N
80891009	Heart	N
76015000	Hepatic artery	Y
8993003	Hepatic vein	Y
24136001	Hip joint	Y
85050009	Humerus	Y
128560002	Hunterian perforating vein	Y
11708003	Hypogastric region	N
81502006	Hypopharynx	N
34516001	Ileum	N
299716001	Iliac and/or femoral artery	Y
10293006	Iliac artery	Y
244411005	Iliac vein	Y
22356005	Ilium	Y
195416006	Inferior cardiac vein	N
51249003	Inferior left pulmonary vein	N
33795007	Inferior mesenteric artery	N
113273001	Inferior right pulmonary vein	N
64131007	Inferior vena cava	N
26893007	Inguinal region	Y
12691009	Innominate artery	N
8887007	Innominate vein	Y
361078006	Internal Auditory Canal	Y
86117002	Internal carotid artery	Y
90024005	Internal iliac artery	Y
12123001	Internal jugular vein	Y
69327007	Internal mammary artery	Y
818987002	Intra-abdominopelvic	N
131183008	Intra-articular	N
1101003	Intracranial	N
32849002	Intra-esophageal	N
816989007	Intra-pelvic	N
661005	Jaw region	N
21306003	Jejunum	N
39352004	Joint	Y
128563000	Juxtaposed atrial appendage	N
64033007	Kidney	N
72696002	Knee	Y
59749000	Lacrimal artery	Y
128979005	Lacrimal artery of right eye	N
14742008	Large intestine	N
4596009	Larynx	N
66720007	Lateral Ventricle	Y
82471001	Left atrium	N
33626005	Left auricular appendage	N
9775002	Left carotid sinus	N
113270003	Left femoral artery	N
273202007	Left hepatic vein	N
133945003	Left hypochondriac region	N
85119005	Left inguinal region	N
68505006	Left lower quadrant of abdomen	N
1017210004	Left lumbar region	N
70253006	Left portal vein	N
50408007	Left pulmonary artery	N
86367003	Left upper quadrant of abdomen	N
87878005	Left ventricle	N
70238003	Left ventricle inflow	N
13418002	Left ventricle outflow tract	N
113264009	Lingual artery	Y
10200004	Liver	N
19100000	Lower inner quadrant of breast	Y
30021000	Lower leg	Y
61685007	Lower limb	Y
33564002	Lower outer quadrant of breast	Y
63337009	Lower trunk	N
34635009	Lumbar artery	Y
52612000	Lumbar region	Y
122496007	Lumbar spine	N
1217253001	Lumbo-sacral spine	N
91747007	Lumen of blood vessel	N
39607008	Lung	Y
91609006	Mandible	N
59066005	Mastoid bone	Y
70925003	Maxilla	Y
72410000	Mediastinum	N
86570000	Mesenteric artery	N
128583004	Mesenteric vein	N
17232002	Middle cerebral artery	Y
273099000	Middle hepatic vein	N
243977002	Morisons pouch	N
123851003	Mouth	N
74386004	Nasal bone	Y
360955006	Nasopharynx	N
45048000	Neck	N
416319003	Neck, Chest, Abdomen and Pelvis	N
416152001	Neck, Chest and Abdomen	N
417437006	Neck and Chest	N
45206002	Nose	N
31145008	Occipital artery	Y
32114007	Occipital vein	Y
113346000	Omental bursa	N
27398004	Omentum	N
53549008	Ophthalmic artery	Y
55024004	Optic canal	Y
363654007	Orbital structure	Y
15497006	Ovary	Y
15776009	Pancreas	N
69930009	Pancreatic duct	N
110621006	Pancreatic duct and bile duct systems	N
2095001	Paranasal sinus	Y
91691001	Parasternal	N
111002	Parathyroid	Y
45289007	Parotid gland	Y
64234005	Patella	Y
83330001	Patent ductus arteriosus	N
816092008	Pelvis	N
1231522001	Pelvis and lower extremities	N
282044005	Penile artery	Y
18911002	Penis	N
38864007	Perineum	N
8821006	Peroneal artery	Y
706342009	Phantom	N
54066008	Pharynx	N
312535008	Pharynx and larynx	N
78067005	Placenta	N
43899006	Popliteal artery	Y
32361000	Popliteal fossa	Y
56849005	Popliteal vein	Y
32764006	Portal vein	N
70382005	Posterior cerebral artery	Y
43119007	Posterior communicating artery	Y
128569001	Posterior medial tributary	N
13363002	Posterior tibial artery	Y
14944004	Primitive aorta	N
91707000	Primitive pulmonary artery	N
31677005	Profunda femoris artery	Y
23438002	Profunda femoris vein	Y
41216001	Prostate	N
81040000	Pulmonary artery	Y
128584005	Pulmonary artery conduit	N
128586007	Pulmonary chamber of cor triatriatum	N
122972007	Pulmonary vein	Y
128566008	Pulmonary vein confluence	N
128567004	Pulmonary venous atrium	N
45631007	Radial artery	Y
62413002	Radius	Y
110535000	Radius and ulna	Y
53843000	Rectouterine pouch	N
34402009	Rectum	N
2841007	Renal artery	Y
25990002	Renal pelvis	Y
56400007	Renal vein	Y
82849001	Retroperitoneum	N
113197003	Rib	Y
73829009	Right atrium	N
68300000	Right auricular appendage	N
69833005	Right femoral artery	N
272998002	Right hepatic vein	N
133946002	Right hypochondriac region	N
37117007	Right inguinal region	N
48544008	Right lower quadrant of abdomen	N
1017211000	Right lumbar region	N
73931004	Right portal vein	N
78480002	Right pulmonary artery	N
50519007	Right upper quadrant of abdomen	N
53085002	Right ventricle	N
8017000	Right ventricle inflow	N
44627009	Right ventricle outflow tract	N
39723000	Sacroiliac joint	Y
54735007	Sacrum	N
128587003	Saphenofemoral junction	Y
362072009	Saphenous vein	Y
41695006	Scalp	N
79601000	Scapula	Y
18619003	Sclera	Y
20233005	Scrotum	Y
42575006	Sella turcica	N
64739004	Seminal vesicle	N
58742003	Sesamoid bones of foot	Y
16982005	Shoulder	Y
60184004	Sigmoid colon	N
89546000	Skull	N
30315005	Small intestine	N
2748008	Spinal cord	N
421060004	Spine	N
78961009	Spleen	N
22083002	Splenic artery	N
35819009	Splenic vein	N
7844006	Sternoclavicular joint	Y
56873002	Sternum	N
69695003	Stomach	N
36765005	Subclavian artery	Y
9454009	Subclavian vein	Y
19695001	Subcostal	Y
5713008	Submandibular area	Y
54019009	Submandibular gland	Y
170887008	Submental	N
5076001	Subxiphoid	N
181349008	Superficial femoral artery	Y
397364003	Superficial femoral vein	Y
15672000	Superficial temporal artery	Y
43863001	Superior left pulmonary vein	N
42258001	Superior mesenteric artery	N
8629005	Superior right pulmonary vein	N
72021004	Superior thyroid artery	Y
48345005	Superior vena cava	N
77621008	Supraclavicular region of neck	Y
11708003	Suprapubic region	N
26493002	Suprasternal notch	N
128589000	Systemic collateral artery to lung	N
128568009	Systemic venous atrium	N
27949001	Tarsal joint	Y
53620006	Temporomandibular joint	Y
40689003	Testis	Y
42695009	Thalamus	Y
68367000	Thigh	Y
49841001	Third ventricle	N
113262008	Thoracic aorta	N
43799004	Thoracic cavity	N
122495006	Thoracic spine	N
1217256009	Thoraco-lumbar spine	N
43799004	Thorax	N
76505004	Thumb	Y
9875009	Thymus	N
69748006	Thyroid	N
12611008	Tibia	Y
110536004	Tibia and fibula	Y
29707007	Toe	Y
21974007	Tongue	N
44567001	Trachea	N
110726009	Trachea and bronchus	N
485005	Transverse colon	N
61959006	Truncus arteriosus communis	N
57850000	Truncus coeliacus	N
22943007	Trunk	N
23416004	Ulna	Y
44984001	Ulnar artery	Y
50536004	Umbilical artery	N
90290004	Umbilical region	N
284639000	Umbilical vein	N
40983000	Upper arm	Y
77831004	Upper inner quadrant of breast	Y
53120007	Upper limb	Y
76365002	Upper outer quadrant of breast	Y
67734004	Upper trunk	N
431491007	Upper urinary tract	N
87953007	Ureter	Y
13648007	Urethra	N
35039007	Uterus	N
110639002	Uterus and fallopian tubes	N
76784001	Vagina	N
312288001	Vascular graft	N
29092000	Vein	Y
34340008	Venous network	N
21814001	Ventricle	Y
85234005	Vertebral artery	Y
110517009	Vertebral column and cranium	N
45292006	Vulva	N
74670003	Wrist joint	Y
13881006	Zygoma	Y

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